Unexpected spreading of G12P[8] rotavirus strains among young children in a small area of central Italy

J Med Virol. 2015 Aug;87(8):1292-302. doi: 10.1002/jmv.24180. Epub 2015 Mar 10.

Abstract

Rotavirus gastroenteritis is associated mainly with the five genotypes G1,3,4,9P[8] and G2P[4] that are common worldwide, but emerging strains including G6, G8, and G12 are also reported sporadically. G12P[8] rotavirus was observed unexpectedly to spread in a limited area of Italy during the rotavirus surveillance season 2012-2013. All strains were genotyped for VP7 and VP4 and subjected to phylogenetic analysis. Amino acid sequences of antigenic regions were compared with vaccine and field strains. G12P[8] strains were detected in the stools of 52 of 69 (75%) children infected with rotavirus in the central Italian region of Umbria. All G12 strains belonged to lineage III, and presented the P[8] genotype. Sequence analysis showed close nucleotide identity of both VP4 and VP7 genes among Umbria G12P[8] strains. The VP7 gene was also similar to other G12 strains circulating in different years and countries, and the VP4 gene was closely related to other local and global P[8] strains possessing different G-types. Overall findings suggest either the introduction and evolution of a G12 VP7 gene into the local Wa-like rotavirus population or the spreading of a strain novel for the area. Comparison of the VP8* and VP7 antigenic regions showed high conservation between the amino acid sequences of Umbria G12P[8] strains, and revealed various substitutions in the VP8* antigenic regions between the Italian G12P[8] strains and RotaTeq™ and Rotarix™ vaccine strains. The sudden and unexpected emergence of G12P[8] rotavirus confirms that these strains have the potential to become a sixth common genotype across the world.

Keywords: G12P[8]; Italy; gastroenteritis; rotavirus A; sporadic, outbreak; surveillance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Viral / genetics
  • Capsid Proteins / genetics
  • Child
  • Child, Preschool
  • Cluster Analysis
  • Gastroenteritis / epidemiology*
  • Gastroenteritis / virology*
  • Genotype*
  • Genotyping Techniques
  • Humans
  • Infant
  • Italy / epidemiology
  • Male
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Phylogeny
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / epidemiology*
  • Rotavirus Infections / virology*
  • Sequence Analysis, DNA
  • Sequence Homology

Substances

  • Antigens, Viral
  • Capsid Proteins
  • VP4 protein, Rotavirus
  • VP7 protein, Rotavirus

Associated data

  • GENBANK/KM205772
  • GENBANK/KM205773
  • GENBANK/KM205774
  • GENBANK/KM205775
  • GENBANK/KM205776
  • GENBANK/KM205777
  • GENBANK/KM205778
  • GENBANK/KM205779
  • GENBANK/KM205780
  • GENBANK/KM205781
  • GENBANK/KM205782
  • GENBANK/KM205783
  • GENBANK/KM205784
  • GENBANK/KM205785
  • GENBANK/KM205786
  • GENBANK/KM205787
  • GENBANK/KM205788
  • GENBANK/KM205789
  • GENBANK/KM205790
  • GENBANK/KM205791
  • GENBANK/KM205792